# Python environments and caches
.venv/
venv/
__pycache__/
*.py[cod]
*.egg-info/
.pytest_cache/
.mypy_cache/
.ruff_cache/
.coverage
.coverage.*
htmlcov/

# Downloaded connectome, caches and upstream code; retain provenance in Git
/data/*
!/data/source.json
/vendor/

# Training outputs and generated distributions (share selected runs as releases)
/runs/
/dist/
/build/
*.zip
*.log
*.tmp
*.part

# Node dependencies and generated site; site-data/ is deliberately committed
node_modules/
/public/*
!/public/favicon.ico
!/public/fly-head.svg
!/public/social-preview.png
/coverage/
/.vercel/

# Local scores, credentials and deployment secrets
/.local/
.env
.env.*
!.env.example
*.sqlite
*.sqlite-*
*.sqlite3
*.sqlite3-*
*.db
*.db-*
*.pem
*.key
*.p12
*.pfx

# Personal editor, agent and operating-system files
/.tools/
/.codex/
/.agents/
.vscode/
.idea/
.DS_Store
Thumbs.db
Desktop.ini
*.swp
*.swo
*~
skills-lock.json

# Next.js build outputs
/.next/
/.generated/
/next-env.d.ts